I would not "bed in" my brand new brakes either.. I was just drive the car normally and allow the "breaking in" of everything.. including the brakes..
My prius does not hardly use the brake pads to stop, it's regen thats why it feels weird to you. electic motors in reverse charging the battery provides a different pedal feel than normal brakes. But to what you did all i got to say is
I agree totally. Recently had an emergency stop.(first in 70,000ks, 43000miles) I've never experienced better braking even in a recent model Mercedes. No skidding just rapid decelleration. Brake by wire can feel odd at times but is totally safe. Feri